ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR396
source: miRBase, original name: zma-MIR396f (MI0013226)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GGTCAAGAAAGCTGTGGGAAG mismatches: 1 bulges: 0 |
pre-miRNA
TTTCCACAGCTTTCTTGAACTTCTTCTTCTTCTTCTCTCTTGGAACGGCAGCTTTCTTCGAATCTGTCTCTCTCTCTCTCATCTCCGAAGACGAAGGTCA
AGAAAGCTGTGGGAAGA
dot-bracket secondary structure
((((((((((((((((((.((((.(((((.(((........)))..(((((.(((....))).)))))..................))))).)))).)))
)))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
TTTCCACAGCTTTCTTGAACTTCTTCTTCTTCTTCTCTCTTGGAACGGCAGCTTTCTTCGAATCTGTCTCTCTCTCTCTCATCTCCGAAGACGAAGGTCA
AGAAAGCTGTGGGAAGA
dot-bracket secondary structure
((((((((((((((((((.((((.(((((.(((........)))..(((((.(((....))).)))))..................))))).)))).)))
)))))))))))))))..
SIMILARITIES| miRBase sbi-MIR396c: 0.0000004 PMRD zma-miR396g: 0.0000000001 microPC miR396: 0.0004 | UniProt no hits RFAM MIR396: 0.000007 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
