ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR529_2
source: miRBase, original name: zma-MIR529 (MI0013241)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAAGAGAGAGAGTACAGCCT miRNA* GCTGTACCCTCTCTCTTCTTC mismatches: 1 bulges: 0 |
pre-miRNA
GAGAAGAGAGAGAGTACAGCCTTGTTGCCATGTACACACTCAGATATCAACAGTCTCTTATATTTGCTGTTACTACCTGTTATTAGTGTCCAGTGATGAT
GAAGGCTGTACCCTCTCTCTTCTTCT
dot-bracket secondary structure
((((((((((((.(((((((((((((..(((....((((((((.((..((((((...........))))))..)).))).....)))))...)))..)))
.)))))))))).))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
GAGAAGAGAGAGAGTACAGCCTTGTTGCCATGTACACACTCAGATATCAACAGTCTCTTATATTTGCTGTTACTACCTGTTATTAGTGTCCAGTGATGAT
GAAGGCTGTACCCTCTCTCTTCTTCT
dot-bracket secondary structure
((((((((((((.(((((((((((((..(((....((((((((.((..((((((...........))))))..)).))).....)))))...)))..)))
.)))))))))).))))))))))))..
SIMILARITIES| miRBase sbi-MIR529: 0.0000000004 PMRD osa-miR529a: 0.000000002 microPC no hits | UniProt no hits RFAM MIR529: 0.000000007 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
