ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR827
source: miRBase, original name: zma-MIR827 (MI0013242)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATGACCATCAGCAAACA miRNA* TTTGTTGGTGGTCATTTAACC mismatches: 2 bulges: 0 |
pre-miRNA
GTTTTGTTGGTGGTCATTTAACCATGCATGCTTCGATCGATGGATTGGTGCATGCATGGATTATTGCATAGTGTGATGCATGTGGCGCATCAGTGCATGG
TTAGATGACCATCAGCAAACAT
dot-bracket secondary structure
..(((((((((((((((((((((((((((....(((((....)))))((((.((((((.(((((........))))).))))))))))....))))))))
)))))))))))))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
GTTTTGTTGGTGGTCATTTAACCATGCATGCTTCGATCGATGGATTGGTGCATGCATGGATTATTGCATAGTGTGATGCATGTGGCGCATCAGTGCATGG
TTAGATGACCATCAGCAAACAT
dot-bracket secondary structure
..(((((((((((((((((((((((((((....(((((....)))))((((.((((((.(((((........))))).))))))))))....))))))))
)))))))))))))))))))...
SIMILARITIES| miRBase ssp-MIR827: 0.0000000004 PMRD osa-miR827b: 0.000002 microPC miR827: 0.000000006 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
