ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR2118
source: miRBase, original name: zma-MIR2118a (MI0011271)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCTGATGCCTCTCATTCCTA miRNA* GGGATGAGAACATGAAGGAACG mismatches: 2 bulges: 2 |
pre-miRNA
CCTAAGGGCAGTAGGGATGAGAACATGAAGGAACGCGAGTGCTCTGAATTTCTCGTCTCGCACGGAGGACATGTGCACTGTCGTGTTCCTGATGCCTCTC
ATTCCTATGGTTCTTAGG
dot-bracket secondary structure
(((((((((.((((((((((((.(((..((((((((((((((.(....((((.(((.....)))))))....).))))..)))))))))).)))..))))
)))))))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"
CCTAAGGGCAGTAGGGATGAGAACATGAAGGAACGCGAGTGCTCTGAATTTCTCGTCTCGCACGGAGGACATGTGCACTGTCGTGTTCCTGATGCCTCTC
ATTCCTATGGTTCTTAGG
dot-bracket secondary structure
(((((((((.((((((((((((.(((..((((((((((((((.(....((((.(((.....)))))))....).))))..)))))))))).)))..))))
)))))))).)))))))))
SIMILARITIES| miRBase osa-MIR2118k: 0.000000002 PMRD zma-miR2118a: 1e-62 microPC no hits | UniProt no hits RFAM MIR2118: 0.0000000000001 |
Identical with: zma-miR2118a from PMRD (MNEST055117) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"
