ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR2118
source: miRBase, original name: zma-MIR2118c (MI0011273)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCTAATGCCTCCCATTCCTA miRNA* GGCATGGGAACATGGAGGAAGG mismatches: 3 bulges: 2 |
pre-miRNA
GGAAGAGGAAGTAAAGATGATCTAAGAGCAGTGGGCATGGGAACATGGAGGAAGGCCTATGAGGTTGAAACCTCATTTTGTGTCTTCCTAATGCCTCCCA
TTCCTATCGTTCTTAGGTGATCCTTCCTCTTGC
dot-bracket secondary structure
(.(((((((((....(((.((((((((((.(((((.((((((.(((..(((((((((.(((((((....)))))))...).)))))))).)))..)))))
).))))).)))))))))).)))))))))))).)
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"
GGAAGAGGAAGTAAAGATGATCTAAGAGCAGTGGGCATGGGAACATGGAGGAAGGCCTATGAGGTTGAAACCTCATTTTGTGTCTTCCTAATGCCTCCCA
TTCCTATCGTTCTTAGGTGATCCTTCCTCTTGC
dot-bracket secondary structure
(.(((((((((....(((.((((((((((.(((((.((((((.(((..(((((((((.(((((((....)))))))...).)))))))).)))..)))))
).))))).)))))))))).)))))))))))).)
SIMILARITIES| miRBase zma-MIR2118d: 9e-36 PMRD zma-miR2118c: 1e-71 microPC no hits | UniProt no hits RFAM MIR2118: 3e-39 |
Identical with: zma-miR2118c from PMRD (MNEST055119) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"
