ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR2118
source: miRBase, original name: zma-MIR2118d (MI0011274)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCTGATGCCTCCCATGCCTA miRNA* GGCATGGGAACACGGAGGAAGG mismatches: 3 bulges: 2 |
pre-miRNA
GTGAGCATGGAAGAGGAAGAGAGGGTCTAAGAGCAGTGGGCATGGGAACACGGAGGAAGGCCTATGAGTGGAAAGCTCATTTTGGGTCTTCCTGATGCCT
CCCATGCCTATCGTTGTTAGGTGCTCCTTCCTCTTGCTTTTGGCTCAC
dot-bracket secondary structure
((((((..(.(((((((((.(((.((((((.(((.((((((((((((...((.((((((((((((((((.....))))))...))))))))))..))..)
))))))))))).))).)))))).)))))))))))).).....))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"
GTGAGCATGGAAGAGGAAGAGAGGGTCTAAGAGCAGTGGGCATGGGAACACGGAGGAAGGCCTATGAGTGGAAAGCTCATTTTGGGTCTTCCTGATGCCT
CCCATGCCTATCGTTGTTAGGTGCTCCTTCCTCTTGCTTTTGGCTCAC
dot-bracket secondary structure
((((((..(.(((((((((.(((.((((((.(((.((((((((((((...((.((((((((((((((((.....))))))...))))))))))..))..)
))))))))))).))).)))))).)))))))))))).).....))))))
SIMILARITIES| miRBase zma-MIR2118c: 1e-35 PMRD zma-miR2118d: 2e-80 microPC no hits | UniProt no hits RFAM MIR2118: 2e-52 |
Identical with: zma-miR2118d from PMRD (MNEST055120) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"
