ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR2118
source: miRBase, original name: zma-MIR2118f (MI0011276)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCCAATGCCTTCCATGCCTA miRNA* GGCATGGGAACATAGGGGAAA mismatches: 2 bulges: 1 |
pre-miRNA
TAAGAGCAGTGGGCATGGGAACATAGGGGAAAGCCAAACTTTCTTTACCTGTACAACTAAGGGTGGAGAACTGGAGATTAGTTTAGTGTTTCCCAATGCC
TTCCATGCCTATTGTTCTTA
dot-bracket secondary structure
((((((((((((((((((((.(((.((((((.((.(((((((((((((((..........)))))))))).........))))).)).)))))).)))..
))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"
TAAGAGCAGTGGGCATGGGAACATAGGGGAAAGCCAAACTTTCTTTACCTGTACAACTAAGGGTGGAGAACTGGAGATTAGTTTAGTGTTTCCCAATGCC
TTCCATGCCTATTGTTCTTA
dot-bracket secondary structure
((((((((((((((((((((.(((.((((((.((.(((((((((((((((..........)))))))))).........))))).)).)))))).)))..
))))))))))))))))))))
SIMILARITIES| miRBase zma-MIR2118c: 0.000001 PMRD zma-miR2118f: 8e-64 microPC no hits | UniProt no hits RFAM MIR2118: 5e-22 |
Identical with: zma-miR2118f from PMRD (MNEST055122) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"
