ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR2275
source: miRBase, original name: zma-MIR2275a (MI0011278)
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGTTGGAGGAAAGCAAACC miRNA* TTTGTTTTCCTCCAATATCTCA mismatches: 0 bulges: 1 |
pre-miRNA
GTCAGGCACTGAAAGTGAGAGTTGGAGGAAAGCAAACCGGCTGGGTATCGGATTCAGCAACGGAGGGTGCTGCCGGTCGGTTTGTTTTCCTCCAATATCT
CACCTTCAGTCGATAGTCTGAT
dot-bracket secondary structure
(((((((((((((.(((((((((((((((((((((((((((((((((((...(((......))).)))))..)))))))))))))))))))))))).)))
))).)))))).....)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"
GTCAGGCACTGAAAGTGAGAGTTGGAGGAAAGCAAACCGGCTGGGTATCGGATTCAGCAACGGAGGGTGCTGCCGGTCGGTTTGTTTTCCTCCAATATCT
CACCTTCAGTCGATAGTCTGAT
dot-bracket secondary structure
(((((((((((((.(((((((((((((((((((((((((((((((((((...(((......))).)))))..)))))))))))))))))))))))).)))
))).)))))).....)))))))
SIMILARITIES| miRBase zma-MIR2275a: 5e-65 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"
