ABOUT THIS RECORDspecies: Schistosoma japonicum
source: Huang et al., original name: sja-miR-3040
Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAAGTGACGCAAACTGGAAA miRNA* TGCAGTAAATGCGTCCTTTGG mismatches: 5 bulges: 3 |
pre-miRNA
GGGTCGAACTGTTGTGCAGTAAATGCGTCCTTTGGTTGAAAACTGATGTCTCGCCTACGCCACAAGTGACGCAAACTGGAAAAGGCCGATCG
dot-bracket secondary structure
.(((((..((....(.((((...((((((((((((((((..((....)).))).....)))).))).)))))).)))).)..))..))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGTCGAACTGTTGTGCAGTAAATGCGTCCTTTGGTTGAAAACTGATGTCTCGCCTACGCCACAAGTGACGCAAACTGGAAAAGGCCGATCG
dot-bracket secondary structure
.(((((..((....(.((((...((((((((((((((((..((....)).))).....)))).))).)))))).)))).)..))..))))).
SIMILARITIES| miRBase sja-mir-3485: 0.00000002 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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