ABOUT THIS RECORDspecies: Schistosoma japonicum
source: Huang et al., original name: sja-miR-3001-c
Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAAAATCGTTGGCAATGGCT miRNA* TTGGGGCCCACGTGGTGATC mismatches: 6 bulges: 1 |
pre-miRNA
AGATGCAGACTACATGGTTGGGGCCCACGTGGTGATCGTAACAAATGCTTAAAGACCTTATGGTTCAAAATCGTTGGCAATGGCTCAGGTGCATC
dot-bracket secondary structure
.((((((..((....(((((..(((.(((...(((((((((....(......)....)))))).)))....))).)))..))))).)).))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGATGCAGACTACATGGTTGGGGCCCACGTGGTGATCGTAACAAATGCTTAAAGACCTTATGGTTCAAAATCGTTGGCAATGGCTCAGGTGCATC
dot-bracket secondary structure
.((((((..((....(((((..(((.(((...(((((((((....(......)....)))))).)))....))).)))..))))).)).))))))
SIMILARITIES| miRBase sja-mir-3495: 5e-49 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: sja-mir-3495 from miRBase (MNEST039018) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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