ABOUT THIS RECORDspecies: Schistosoma japonicum
source: Huang et al., original name: sja-miR-3079
Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCTCGAACTGTTGTGGCCA miRNA* GTCAGCGACACCAATTGAGGTGA mismatches: 5 bulges: 3 |
pre-miRNA
GACGTCCCCGTCCTCGAACTGTTGTGGCCACCGCACCTTCATCTCGTGCAGAGTCAGCGACACCAATTGAGGTGAGGAACAAT
dot-bracket secondary structure
....(((.((.((((((..(((((((((..(.((((.........)))).).)))).)))))....)))))))).))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GACGTCCCCGTCCTCGAACTGTTGTGGCCACCGCACCTTCATCTCGTGCAGAGTCAGCGACACCAATTGAGGTGAGGAACAAT
dot-bracket secondary structure
....(((.((.((((((..(((((((((..(.((((.........)))).).)))).)))))....)))))))).))).....
SIMILARITIES| miRBase sja-mir-3489: 6e-42 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: sja-miR-3052 from Huang et al. (MNEST044049) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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