ABOUT THIS RECORDspecies: Schistosoma japonicum
source: Huang et al., original name: sja-miR-3035
Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGCGCACTGCCGAGGATTTC miRNA* ACTCCTCGGCAGTGTTCGCAAAC mismatches: 2 bulges: 2 |
pre-miRNA
CTAGTATGGAACTCCTCGGCAGTGTTCGCAAACCTGAAGCCCGTGGGGCAGAATCTAGGATGCGCACTGCCGAGGATTTCCATACTAGGA
dot-bracket secondary structure
(((((((((((.((((((((((((..((((..(((((.((((...))))....)).))).)))))))))))))))).)))))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CTAGTATGGAACTCCTCGGCAGTGTTCGCAAACCTGAAGCCCGTGGGGCAGAATCTAGGATGCGCACTGCCGAGGATTTCCATACTAGGA
dot-bracket secondary structure
(((((((((((.((((((((((((..((((..(((((.((((...))))....)).))).)))))))))))))))).)))))))))))..
SIMILARITIES| miRBase sja-mir-3482: 4e-46 PMRD no hits microPC no hits | UniProt no hits RFAM Hammerhead_1: 0.000005 |
Identical with: sja-mir-3482 from miRBase (MNEST039001) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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