ABOUT THIS RECORDspecies: Schistosoma japonicum
source: Huang et al., original name: sja-miR-60
Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTATGCAACGTTTCACTCT miRNA* AGTGAGATTGTTGCATATTTACA mismatches: 2 bulges: 2 |
pre-miRNA
CTAGGGGATGAGTGAGATTGTTGCATATTTACATTGCTGGTATGTATTATGCAACGTTTCACTCTACTCCGGGGA
dot-bracket secondary structure
((.((((..(((((((((.((((((((..(((((.......))))).)))))))))))))))))..)))).))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
CTAGGGGATGAGTGAGATTGTTGCATATTTACATTGCTGGTATGTATTATGCAACGTTTCACTCTACTCCGGGGA
dot-bracket secondary structure
((.((((..(((((((((.((((((((..(((((.......))))).)))))))))))))))))..)))).))..
SIMILARITIES| miRBase sja-mir-2162: 3e-37 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: sja-mir-2162 from miRBase (MNEST038992) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
