ABOUT THIS RECORDspecies: Schistosoma japonicum
source: Huang et al., original name: sja-miR-3081
Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCTTTGGGTTGTGGGGATA miRNA* TTCTTACGACAAGAAATTGGAGC mismatches: 3 bulges: 3 |
pre-miRNA
GTGTTATTGTGCATTCTTACGACAAGAAATTGGAGCATTCAATCGTTTTCTGACGAGTTGTTGTTATTCCTTTGGGTTGTGGGGATAATAATCAAGG
dot-bracket secondary structure
.....(((((..(((((((((((..(((...((((((..((((((((....))))).))).)))...))))))..))))))))))).))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GTGTTATTGTGCATTCTTACGACAAGAAATTGGAGCATTCAATCGTTTTCTGACGAGTTGTTGTTATTCCTTTGGGTTGTGGGGATAATAATCAAGG
dot-bracket secondary structure
.....(((((..(((((((((((..(((...((((((..((((((((....))))).))).)))...))))))..))))))))))).))))).....
SIMILARITIES| miRBase sja-mir-3490: 3e-50 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: sja-mir-3490 from miRBase (MNEST039013) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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