ABOUT THIS RECORDspecies: Schistosoma japonicum
miRNA family: mir-71
source: Hao et al., original name: sja-miR-71
Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAAGACTTGAGTAGTGAGACG miRNA* CCTCATACTAAGTCTTTCCCG mismatches: 2 bulges: 2 |
pre-miRNA
TTGCTGTGAAAGACTTGAGTAGTGAGACGCTTATAGCGTTGTTGTCTGCGGTTCGGCGCCTCATACTAAGTCTTTCCCGGCTC
dot-bracket secondary structure
..((((.(((((((((.((((.((((.((((...(.(((........))).)..)))).))))))))))))))))).))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W, PLoS Negl Trop Dis. 4:e596(2010)., "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum"
[2] Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W, PLoS One. 3:e4034(2008)., "Identification and characterization of novel microRNAs from Schistosoma japonicum"
TTGCTGTGAAAGACTTGAGTAGTGAGACGCTTATAGCGTTGTTGTCTGCGGTTCGGCGCCTCATACTAAGTCTTTCCCGGCTC
dot-bracket secondary structure
..((((.(((((((((.((((.((((.((((...(.(((........))).)..)))).))))))))))))))))).))))..
SIMILARITIES| miRBase sja-mir-71b: 6e-42 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: sja-miR-71b from Huang et al. (MNEST044012) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W, PLoS Negl Trop Dis. 4:e596(2010)., "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum"
[2] Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W, PLoS One. 3:e4034(2008)., "Identification and characterization of novel microRNAs from Schistosoma japonicum"
