ABOUT THIS RECORDspecies: Schistosoma japonicum
source: Hao et al., original name: sja-miR-219
Taxonomy by NCBI:
Schistosoma japonicum Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGTCCATTCGCATTTCTTG miRNA* AGAGGTGTTAATGGACATCATA mismatches: 1 bulges: 1 |
pre-miRNA
ACAATCGATTCACTGATTGTCCATTCGCATTTCTTGTTAGAAACATTTTCAATTATTATCATTATTCAATGATAATGATGATAATATTTAATTCACAAGA
GGTGTTAATGGACATCATATGATCGATATTAATCATCTGTTGAGT
dot-bracket secondary structure
...(((((((...((((.(((((((.(((((((((((..(((.....))).(((((((((((((((....))))))))))))))).........))))))
))))).)))))))))))...))))))).....(((.....)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W, PLoS Negl Trop Dis. 4:e596(2010)., "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum"
ACAATCGATTCACTGATTGTCCATTCGCATTTCTTGTTAGAAACATTTTCAATTATTATCATTATTCAATGATAATGATGATAATATTTAATTCACAAGA
GGTGTTAATGGACATCATATGATCGATATTAATCATCTGTTGAGT
dot-bracket secondary structure
...(((((((...((((.(((((((.(((((((((((..(((.....))).(((((((((((((((....))))))))))))))).........))))))
))))).)))))))))))...))))))).....(((.....)))..
SIMILARITIES| miRBase sja-mir-219: 3e-70 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W, PLoS Negl Trop Dis. 4:e596(2010)., "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum"
