ABOUT THIS RECORDspecies: Brassica napus
source: microPC, original name: miR399
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTGCCC miRNA* GAAACTCAACGTTGGCAAG mismatches: 4 bulges: 0 |
pre-miRNA
GGGAAACTCAACGTTGGCAAGGAAACTATAATCAGTGAGACAATATTATTGCTCACAAGATTGAGGTTGAGTCTTTGCCAAAGGAGAGTTGCCC
dot-bracket secondary structure
(((.(((((..(.((((((((((((((.(((((.(((((.((((...)))))))))..))))).))))...)))))))))).)..))))).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGAAACTCAACGTTGGCAAGGAAACTATAATCAGTGAGACAATATTATTGCTCACAAGATTGAGGTTGAGTCTTTGCCAAAGGAGAGTTGCCC
dot-bracket secondary structure
(((.(((((..(.((((((((((((((.(((((.(((((.((((...)))))))))..))))).))))...)))))))))).)..))))).)))
SIMILARITIES| miRBase vvi-MIR399b: 0.0003 PMRD vvi-miR399b: 0.0003 microPC miR399: 2e-48 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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