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ABOUT THIS RECORD
ID:
MNEST044791
species:
Lactuca sativa
miRNA family:
MIR172
source:
microPC, original name:
miR172
Taxonomy by NCBI:
Lactuca sativa
Lactuca
Lactucinae
Cichorieae
Cichorioideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGAATCTTGATGATGCTGCA
miRNA*
CGGCATCTTCAAGATTCACA
mismatches:
3
bulges:
0
View larger
pre-miRNA
TG
CGGCATCTTCAAGATTCACA
TGCCAATATTCAACTCTAGATAAGTTTTTGGTTAATGGGTAATG
AGAATCTTGATGATGCTGCA
dot-bracket secondary structure
.(
(((((((.(((((((((.((
((((..((((.((((..(((....)))..))))))))))).)))
.))))))))).)))))))).
SIMILARITIES
miRBase
ath-MIR172a
:
0.000001
PMRD
ath-miRf11033-akr
:
0.000001
microPC
miR172
:
1e-43
UniProt
no hits
RFAM
mir-172: 0.00002
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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