ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR166
source: microPC, original name: miR166
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGTTGTCTGGCTCGAGG mismatches: 4 bulges: 0 |
pre-miRNA
GGAATGTTGTCTGGCTCGAGGCCACTAACTAGATCTTTGATTTAATCTCAGTTGATCATATATTTGTTTCATTTTTCTTCCATAAAATTTAATTATATTG
AGATACCCATCATTGATCTTAAGATAATTAAGTTAGTGACGTCGGACCAGGCTTCATTCC
dot-bracket secondary structure
((((((..((((((..(((.(.(((((((((((((..((((...((((((((((((..((.((((...................)))).)))))).))))
))))....))))..)))))...........)))))))).).)))..))))))..))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGAATGTTGTCTGGCTCGAGGCCACTAACTAGATCTTTGATTTAATCTCAGTTGATCATATATTTGTTTCATTTTTCTTCCATAAAATTTAATTATATTG
AGATACCCATCATTGATCTTAAGATAATTAAGTTAGTGACGTCGGACCAGGCTTCATTCC
dot-bracket secondary structure
((((((..((((((..(((.(.(((((((((((((..((((...((((((((((((..((.((((...................)))).)))))).))))
))))....))))..)))))...........)))))))).).)))..))))))..))))))
SIMILARITIES| miRBase ctr-MIR166: 1e-87 PMRD vvi-miR166e: 0.000000002 microPC miR166: 1e-87 | UniProt no hits RFAM mir-166: 0.000000002 |
Identical with: ctr-MIR166 from miRBase (MNEST041279) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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