ABOUT THIS RECORDspecies: Nicotiana tabacum
source: microPC, original name: miR390
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGC miRNA* TATCCATCCTGAGTTT mismatches: 1 bulges: 0 |
pre-miRNA
TAAGCTCAGGAGGGATAGCACCATGGAGAGACTATACTATCTTCATGAGCTTAAAACTGCGATCCGTTGCGCTATCCATCCTGAGTTT
dot-bracket secondary structure
)((((((((((.(((((((..((((((((..........)))))))).((........))..........))))))).))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TAAGCTCAGGAGGGATAGCACCATGGAGAGACTATACTATCTTCATGAGCTTAAAACTGCGATCCGTTGCGCTATCCATCCTGAGTTT
dot-bracket secondary structure
)((((((((((.(((((((..((((((((..........)))))))).((........))..........))))))).))))))))))
SIMILARITIES| miRBase ghr-MIR390c: 2.0E-5 PMRD mtr-miR390: 2.0E-5 microPC miR390: 3.0E-44 | UniProt no hits RFAM 0MIR390: 7.0E-5 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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