ABOUT THIS RECORDspecies: Nicotiana tabacum
source: microPC, original name: miR390
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGC miRNA* TATCCATCCTGAGTTT mismatches: 1 bulges: 0 |
pre-miRNA
AAGCTCAGGAGGGATAGCACCATGGAGAGACTATACTATCTTCATGAGCTTAAAACTGCGATCCGTTGCGCTATCCATCCTGAGTTT
dot-bracket secondary structure
((((((((((.(((((((..((((((((..........)))))))).((........))..........))))))).))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AAGCTCAGGAGGGATAGCACCATGGAGAGACTATACTATCTTCATGAGCTTAAAACTGCGATCCGTTGCGCTATCCATCCTGAGTTT
dot-bracket secondary structure
((((((((((.(((((((..((((((((..........)))))))).((........))..........))))))).))))))))))
SIMILARITIES| miRBase ghr-MIR390c: 0.00002 PMRD mtr-miR390: 0.00002 microPC miR390: 3e-44 | UniProt no hits RFAM MIR390: 0.00007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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