ABOUT THIS RECORDspecies: Gossypium hirsutum
source: microPC, original name: miR1533
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATAATAATAATAATG miRNA* TTATTCTTATTCTCATTATT mismatches: 1 bulges: 3 |
pre-miRNA
CATTATTCTTATTCTCATTATTACCATGCACAAAGGTTATTATTATGGTTACTGTGTTTCTCAATCTTTCTTCATCTTCTAATAATAATAATAATG
dot-bracket secondary structure
(((((((.(((((...((((.....(((...(((((((.....(((((...)))))......)))))))...)))....))))))))).)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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CATTATTCTTATTCTCATTATTACCATGCACAAAGGTTATTATTATGGTTACTGTGTTTCTCAATCTTTCTTCATCTTCTAATAATAATAATAATG
dot-bracket secondary structure
(((((((.(((((...((((.....(((...(((((((.....(((((...)))))......)))))))...)))....))))))))).)))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
