ABOUT THIS RECORDspecies: Triticum aestivum
source: microPC, original name: miR1128
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTACTCCCTCCGTCCGAAA miRNA* CCGGACGGAGGGAGTA mismatches: 2 bulges: 0 |
pre-miRNA
CTACTCCCTCCGTCCGAAAATATTTGTCATCAAAATCGATAAAAAGAGATGTATCTAGAACTAAAATACATCTAGATACATCCTTTTTTATCTAGTTTGA
TGACAAGTATTTCCGGACGGAGGGAGTA
dot-bracket secondary structure
.(((((((((((((((.(((((((((((((((((...(((((((((.((((((((((((...........)))))))))))).)))))))))...)))))
)))))))))))).)))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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CTACTCCCTCCGTCCGAAAATATTTGTCATCAAAATCGATAAAAAGAGATGTATCTAGAACTAAAATACATCTAGATACATCCTTTTTTATCTAGTTTGA
TGACAAGTATTTCCGGACGGAGGGAGTA
dot-bracket secondary structure
.(((((((((((((((.(((((((((((((((((...(((((((((.((((((((((((...........)))))))))))).)))))))))...)))))
)))))))))))).)))))))))))))))
SIMILARITIES| miRBase tae-MIR1128: 2e-39 PMRD tae-miR1128: 2e-42 microPC miR1128: 1e-68 | UniProt no hits RFAM MIR1122: 7e-43 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
