ABOUT THIS RECORDspecies: Manihot esculenta
source: microPC, original name: miR399
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCC miRNA* CAAAACCTCCATTGGCATG mismatches: 2 bulges: 1 |
pre-miRNA
GGCAAAACCTCCATTGGCATGCAGCCACACTAAGATTCTCTATCCTTGTTGTGCATTCCTATAGTGTGCTCCATGCCAAAGGAGATTTGCC
dot-bracket secondary structure
((((((..((((.((((((((.(((.((((((.(((.....)))..((.....))......))))))))).)))))))).)))).))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGCAAAACCTCCATTGGCATGCAGCCACACTAAGATTCTCTATCCTTGTTGTGCATTCCTATAGTGTGCTCCATGCCAAAGGAGATTTGCC
dot-bracket secondary structure
((((((..((((.((((((((.(((.((((((.(((.....)))..((.....))......))))))))).)))))))).)))).))))))
SIMILARITIES| miRBase rco-MIR399c: 0.00000002 PMRD ptc-miRf10808-akr: 0.00007 microPC miR399: 1e-46 | UniProt no hits RFAM mir-399: 0.0000003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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