ABOUT THIS RECORDspecies: Citrus reticulata
source: microPC, original name: miR171
Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGCCGTGCCAATATCAC miRNA* GATATTGGTGCGGTTCAAT mismatches: 4 bulges: 0 |
pre-miRNA
GATATTGGTGCGGTTCAATAAGAAAACGGTGCTCAATACTTTTTGAGCTCCGCTTTTTGATTGAGCCGTGCCAATATCAC
dot-bracket secondary structure
((((((((..(((((((((.(((((.(((.((((((......)))))).))).))))).)))))))))..))))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GATATTGGTGCGGTTCAATAAGAAAACGGTGCTCAATACTTTTTGAGCTCCGCTTTTTGATTGAGCCGTGCCAATATCAC
dot-bracket secondary structure
((((((((..(((((((((.(((((.(((.((((((......)))))).))).))))).)))))))))..))))))))..
SIMILARITIES| miRBase crt-MIR171: 4e-40 PMRD vvi-miR171c: 4e-18 microPC miR171: 4e-40 | UniProt no hits RFAM MIR171_1: 2e-17 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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