ABOUT THIS RECORDspecies: Beta vulgaris
miRNA family: MIR396
source: microPC, original name: miR396
Taxonomy by NCBI:
Beta vulgaris Beta Amaranthaceae Caryophyllales core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GTTCAAGAAAGTTGTGGGA mismatches: 0 bulges: 0 |
pre-miRNA
TTCCACAGCTTTCTTGAACTTTCCGCTCGTCGTGTTCGTACGTCTCCTCTAACTAATTACATTCATGGTGATCATGTTTATGGTGGAGGAGATCCACGAG
GCGAACCGAATCCATAAAATTCACCATGGAAAGTTCAAGAAAGTTGTGGGA
dot-bracket secondary structure
(((((((((((((((((((((((((....((((.(((((..((((((((((.(((...((((((.....))..))))...)))))))))))))..)))))
))))...((((.......))))....)))))))))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTCCACAGCTTTCTTGAACTTTCCGCTCGTCGTGTTCGTACGTCTCCTCTAACTAATTACATTCATGGTGATCATGTTTATGGTGGAGGAGATCCACGAG
GCGAACCGAATCCATAAAATTCACCATGGAAAGTTCAAGAAAGTTGTGGGA
dot-bracket secondary structure
(((((((((((((((((((((((((....((((.(((((..((((((((((.(((...((((((.....))..))))...)))))))))))))..)))))
))))...((((.......))))....)))))))))))))))))))))))))
SIMILARITIES| miRBase tcc-MIR396c: 0.000007 PMRD bna-miR396a: 0.000007 microPC miR396: 3e-82 | UniProt no hits RFAM MIR396: 0.0001 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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