ABOUT THIS RECORDspecies: Raphanus raphanistrum subsp. maritimus
source: microPC, original name: miR171
Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGTCAATATCT miRNA* ATATTGGCCTGGTTCATTCAGA mismatches: 3 bulges: 0 |
pre-miRNA
GATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAATATCT
dot-bracket secondary structure
(((((((((.(((((((.((((((..((............................)).)))))).))))))).))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
GATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAATATCT
dot-bracket secondary structure
(((((((((.(((((((.((((((..((............................)).)))))).))))))).))))))))).
SIMILARITIES| miRBase bna-MIR171g: 0.00000002 PMRD bna-miR171g: 0.00000002 microPC miR171: 6e-42 | UniProt no hits RFAM MIR171_1: 0.000004 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
