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ABOUT THIS RECORD

ID: MNEST044866
species: Manihot esculenta
miRNA family: MIR172
source: microPC, original name: miR172

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAATCTTGATGATGCTGCAT

miRNA*
 GCGTCACCATCAAGATTCAC

mismatches: 2
bulges: 0
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pre-miRNA
 ATGCGTCACCATCAAGATTCACAAAACTATGAAGGCTTCATCGGGACGGTGAGTGTACGGCCGGCGGCGGTGGCTCTTCTTACTTAAAAGGTTTCCTTTT
TCGTATGAGAATCTTGATGATGCTGCAT

dot-bracket secondary structure
(((((.((.(((((((((((..........((((((.((((((...))))))...(((.(((...))).))))).)))).(((..((((((...))))))
..)))...))))))))))).)).)))))


SIMILARITIES
miRBase aqc-MIR172a: 0.0000004

PMRD mes-miR172: 1e-68

microPC miR172: 2e-67		UniProt no hits

RFAM mir-172: 0.000007

Identical with: mes-miR172 from PMRD (MNEST048693)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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