ABOUT THIS RECORDspecies: Saccharum officinarum
source: microPC, original name: miR444
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCTGTCTCAAGCTTGCTGC miRNA* GACAAGCTAGAGGCAGCAACT mismatches: 3 bulges: 0 |
pre-miRNA
GTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTCGAACCATACCGATAATTTTCTTGCAAGTTGTGCAGTTGCTGTCTCAAGCT
TGCTGC
dot-bracket secondary structure
((..((((((.(((((((((((((((((.(((((((((((((((....(((........)))))))))))))))))).))))))))))))))))).))))
))..))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTCGAACCATACCGATAATTTTCTTGCAAGTTGTGCAGTTGCTGTCTCAAGCT
TGCTGC
dot-bracket secondary structure
((..((((((.(((((((((((((((((.(((((((((((((((....(((........)))))))))))))))))).))))))))))))))))).))))
))..))
SIMILARITIES| miRBase ssp-MIR444c: 4e-53 PMRD pvi-miR444: 1e-43 microPC miR444: 2e-55 | UniProt no hits RFAM MIR444: 2e-49 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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