ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: MIR162
source: microPC, original name: miR162
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGATGCAGCGGTTCATCGATC mismatches: 2 bulges: 0 |
pre-miRNA
CTGGATGCAGCGGTTCATCGATCTGTTCCCTAAGCCTGATGATGAATGAATTAAAAAATAATAAGGAAAAAAAATCGAAGGTAGGAGATAGAGAGAGAAG
AGAGAGGCAAAAGGAATCGGTCGATAAACCTCTGCATCCAG
dot-bracket secondary structure
((((((((((.((((.(((((((.(((((....((((..((((......))))....................(((..........)))...........
....))))....))))).))))))).)))).))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CTGGATGCAGCGGTTCATCGATCTGTTCCCTAAGCCTGATGATGAATGAATTAAAAAATAATAAGGAAAAAAAATCGAAGGTAGGAGATAGAGAGAGAAG
AGAGAGGCAAAAGGAATCGGTCGATAAACCTCTGCATCCAG
dot-bracket secondary structure
((((((((((.((((.(((((((.(((((....((((..((((......))))....................(((..........)))...........
....))))....))))).))))))).)))).))))))))))
SIMILARITIES| miRBase sly-MIR162: 0.0000000000005 PMRD sly-miR162: 0.0000000000005 microPC miR162: 2e-31 | UniProt no hits RFAM MIR162_2: 0.00000003 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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