ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR157
source: microPC, original name: miR157
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCTGTCA mismatches: 1 bulges: 1 |
pre-miRNA
TGACAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAATTTGGGCAGCAAAAGCATCTCAATTCATTTGTGCTCTCTATGCTTCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((.((((((((.(((((.......(((.....))).......))))).)))..))))).))))))))))).)))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
TGACAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAATTTGGGCAGCAAAAGCATCTCAATTCATTTGTGCTCTCTATGCTTCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((.((((((((.(((((.......(((.....))).......))))).)))..))))).))))))))))).)))))))).
SIMILARITIES| miRBase sly-MIR156a: 8e-51 PMRD sly-miR156a: 8e-51 microPC miR157: 8e-51 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
