ABOUT THIS RECORDspecies: Populus x canadensis
source: microPC, original name: miR1444
Taxonomy by NCBI:
Populus x canadensis Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACATTCGGTCAATGTTC miRNA* ATGTTGACCGAATATGGA mismatches: 1 bulges: 0 |
pre-miRNA
GAATGTTGACCGAATATGGATGAAAAGTTGTTTTCCGTTTCCTTTCCTCCACATTCGGTCAATGTTC
dot-bracket secondary structure
(((((((((((((((.((((.((((.(..(........)..))))).)))).)))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAATGTTGACCGAATATGGATGAAAAGTTGTTTTCCGTTTCCTTTCCTCCACATTCGGTCAATGTTC
dot-bracket secondary structure
(((((((((((((((.((((.((((.(..(........)..))))).)))).)))))))))))))))
SIMILARITIES| miRBase ptc-MIR1444a: 4e-30 PMRD ptc-miRf10526-akr: 4e-30 microPC miR1444: 2e-32 | UniProt no hits RFAM MIR1444: 7e-29 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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