ABOUT THIS RECORDspecies: Festuca arundinacea
source: microPC, original name: miR171
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATAT miRNA* GTTGGCATGGTTCAATCAAC mismatches: 0 bulges: 0 |
pre-miRNA
ATGTTGGCATGGTTCAATCAACAATCGAGTGGTCTCTGCATAGCTTCCTTGCTAGCGTGGTGGCATGCTGCTTTGCTTGATCTGATTGAGCCGTGCCAAT
AT
dot-bracket secondary structure
((((((((((((((((((((...((((((..(.....((((.(((.((.((....)).)).)))))))....)..)))))).))))))))))))))))))
))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGTTGGCATGGTTCAATCAACAATCGAGTGGTCTCTGCATAGCTTCCTTGCTAGCGTGGTGGCATGCTGCTTTGCTTGATCTGATTGAGCCGTGCCAAT
AT
dot-bracket secondary structure
((((((((((((((((((((...((((((..(.....((((.(((.((.((....)).)).)))))))....)..)))))).))))))))))))))))))
))
SIMILARITIES| miRBase far-MIR171: 4e-53 PMRD vvi-miR171i: 0.000005 microPC miR171: 4e-53 | UniProt no hits RFAM MIR171_1: 0.00009 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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