ABOUT THIS RECORDspecies: Vigna unguiculata
miRNA family: MIR162
source: microPC, original name: miR162
Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCA miRNA* GAGGCAGCGGTTCATCGATC mismatches: 4 bulges: 0 |
pre-miRNA
TGGAGGCAGCGGTTCATCGATCTCTTCCTGAATTTGGCTGTGGAAGAACACAAAGCAAGAATCGGTCGATAAACCTCTGCATCCA
dot-bracket secondary structure
.(((.((((.((((.(((((((..(((.((........((((......))))...)).)))..))))))).)))).)))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGGAGGCAGCGGTTCATCGATCTCTTCCTGAATTTGGCTGTGGAAGAACACAAAGCAAGAATCGGTCGATAAACCTCTGCATCCA
dot-bracket secondary structure
.(((.((((.((((.(((((((..(((.((........((((......))))...)).)))..))))))).)))).)))).))).
SIMILARITIES| miRBase cpa-MIR162a: 3e-16 PMRD cpa-miR162a: 3e-16 microPC miR162: 4e-43 | UniProt no hits RFAM MIR162_2: 0.000000000000005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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