ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR166
source: microPC, original name: miR166
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGACT mismatches: 4 bulges: 0 |
pre-miRNA
GGGGAATGTTGTCTGGCTCGACTTCATCCGGATTTGGGCTCCAATGTTCGGATGCCGTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((((((((..((((((..((((..(((((((((((((...)))).)))))))))..))))..))))))..))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGGAATGTTGTCTGGCTCGACTTCATCCGGATTTGGGCTCCAATGTTCGGATGCCGTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((((((((..((((((..((((..(((((((((((((...)))).)))))))))..))))..))))))..))))))))
SIMILARITIES| miRBase pta-MIR166a: 5e-39 PMRD pta-miR166a: 5e-39 microPC miR166: 8e-38 | UniProt no hits RFAM mir-166: 0.00002 |
Identical with: pta-MIR166a from miRBase (MNEST039420) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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