ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: microPC, original name: miR169
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCCAAGGATGACTTGCCGG miRNA* GGCAAGTCTGTCCTTGGCT mismatches: 1 bulges: 1 |
pre-miRNA
AGCCAAGGATGACTTGCCGGCTCCTGGAACCTGGAGGCGTCTCAGCTTGCTGTGCTGAGGCTTAGAACTCAGTCGGCAAGTCTGTCCTTGGCT
dot-bracket secondary structure
(((((((((((((((((((.((((.(....).))))..((((((((.......))))))))............))))))))).))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGCCAAGGATGACTTGCCGGCTCCTGGAACCTGGAGGCGTCTCAGCTTGCTGTGCTGAGGCTTAGAACTCAGTCGGCAAGTCTGTCCTTGGCT
dot-bracket secondary structure
(((((((((((((((((((.((((.(....).))))..((((((((.......))))))))............))))))))).))))))))))
SIMILARITIES| miRBase zma-MIR169c: 4e-43 PMRD zma-miR169r: 4e-43 microPC miR169: 7e-48 | UniProt no hits RFAM MIR169_2: 8e-42 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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