ABOUT THIS RECORDspecies: Festuca arundinacea
source: microPC, original name: miR171
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATC miRNA* TGTTGGCATGGTTCAATC mismatches: 0 bulges: 0 |
pre-miRNA
GATGTTGGCATGGTTCAATCAACAATCGAGTGGTCTCTGCATAGCTTCCTTGCTAGCGTGGTGGCATGCTGCTTTGCTTGATCTGATTGAGCCGTGCCAA
TATC
dot-bracket secondary structure
(((((((((((((((((((((...((((((..(.....((((.(((.((.((....)).)).)))))))....)..)))))).)))))))))))))))))
))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GATGTTGGCATGGTTCAATCAACAATCGAGTGGTCTCTGCATAGCTTCCTTGCTAGCGTGGTGGCATGCTGCTTTGCTTGATCTGATTGAGCCGTGCCAA
TATC
dot-bracket secondary structure
(((((((((((((((((((((...((((((..(.....((((.(((.((.((....)).)).)))))))....)..)))))).)))))))))))))))))
))))
SIMILARITIES| miRBase far-MIR171: 2e-54 PMRD vvi-miR171i: 0.000001 microPC miR171: 2e-54 | UniProt no hits RFAM MIR171_1: 0.00002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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