ABOUT THIS RECORDspecies: Gossypium hirsutum
source: microPC, original name: miR171
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGCGCCAATATCA miRNA* ATGTTGGTGAGGTTCAATC mismatches: 2 bulges: 0 |
pre-miRNA
GATGTTGGTGAGGTTCAATCCGAAGACGGATTTACGAATTGATTCAGTCGTAAAATACGATCTCAGATTGAGCCGCGCCAATATCA
dot-bracket secondary structure
((((((((((.(((((((((.((.((((..(((((((.(((...))))))))))...)).)))).))))))))).)))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GATGTTGGTGAGGTTCAATCCGAAGACGGATTTACGAATTGATTCAGTCGTAAAATACGATCTCAGATTGAGCCGCGCCAATATCA
dot-bracket secondary structure
((((((((((.(((((((((.((.((((..(((((((.(((...))))))))))...)).)))).))))))))).)))))))))).
SIMILARITIES| miRBase tcc-MIR171c: 1e-36 PMRD ghr-miR171: 4e-43 microPC miR171: 1e-43 | UniProt no hits RFAM MIR171_1: 6e-24 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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