ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
miRNA family: MIR396
source: microPC, original name: miR396
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GCTCAAGAAAGCTGTGGGA mismatches: 1 bulges: 0 |
pre-miRNA
TTCCACAGCTTTCTTGAACTTCTTTGCCTTGCTTAATCTGTGTATATATAGATCACTACATGTACAGCTCCTATATATATAAATATATGTATGTATAGCG
CCATGGAAGCTCAAGAAAGCTGTGGGA
dot-bracket secondary structure
(((((((((((((((((.(((((..((.............(((((((.(((....))).)))))))....(((((((((((......))))))))))).)
)...))))).)))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTCCACAGCTTTCTTGAACTTCTTTGCCTTGCTTAATCTGTGTATATATAGATCACTACATGTACAGCTCCTATATATATAAATATATGTATGTATAGCG
CCATGGAAGCTCAAGAAAGCTGTGGGA
dot-bracket secondary structure
(((((((((((((((((.(((((..((.............(((((((.(((....))).)))))))....(((((((((((......))))))))))).)
)...))))).)))))))))))))))))
SIMILARITIES| miRBase ptc-MIR396e: 1e-34 PMRD ptc-miRf11357-akr: 1e-34 microPC miR396: 1e-34 | UniProt no hits RFAM MIR396: 3e-33 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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