ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR162
source: microPC, original name: miR162
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGAGGCAGCGGTTCATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
CTGGAGGCAGCGGTTCATCGATCAATTCCTGTGAAAAATGATGTTGGAAACAATTTACATGGCAAGCATGAATCGATCGATAAACCTCTGCATCCAG
dot-bracket secondary structure
(((((.((((.((((.(((((((.((((.(((.....(((..((((....))))...))).....))).)))).))))))).)))).)))).)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CTGGAGGCAGCGGTTCATCGATCAATTCCTGTGAAAAATGATGTTGGAAACAATTTACATGGCAAGCATGAATCGATCGATAAACCTCTGCATCCAG
dot-bracket secondary structure
(((((.((((.((((.(((((((.((((.(((.....(((..((((....))))...))).....))).)))).))))))).)))).)))).)))))
SIMILARITIES| miRBase ath-MIR162b: 0.0000000000003 PMRD ath-miRf10254-akr: 0.0000000000003 microPC miR162: 3e-50 | UniProt no hits RFAM MIR162_2: 0.000000000006 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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