ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR819
source: microPC, original name: miR819
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGGTTATAAGACTTTCTAG miRNA* AGAAAGTCTTATAATATGA mismatches: 2 bulges: 0 |
pre-miRNA
TCAGGTTATAAGACTTTCTAGGCACACATATATGTATAGACTCATTAACATATATATATAAATATGGGCAATAATAGAAAGTCTTATAATATGA
dot-bracket secondary structure
(((.((((((((((((((((.((...(((((.((((((................)))))).))))).)).....)))))))))))))))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCAGGTTATAAGACTTTCTAGGCACACATATATGTATAGACTCATTAACATATATATATAAATATGGGCAATAATAGAAAGTCTTATAATATGA
dot-bracket secondary structure
(((.((((((((((((((((.((...(((((.((((((................)))))).))))).)).....)))))))))))))))).)))
SIMILARITIES| miRBase osa-MIR819k: 0.00007 PMRD osa-miRf11996-akr: 0.00007 microPC miR819: 0.00007 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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