ABOUT THIS RECORDspecies: Glycine max
source: microPC, original name: miR171
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCA miRNA* ATATTGGTCCGGTTCAATA mismatches: 3 bulges: 0 |
pre-miRNA
GATATTGGTCCGGTTCAATAAGAAAGCAATGCTCAAAATGTTTTTGGGTCCTGTTTTTTCATTGAGCCGTGCCAATATCA
dot-bracket secondary structure
((((((((..(((((((((.((((((((..(((((((.....)))))))..)))))))).)))))))))..)))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
GATATTGGTCCGGTTCAATAAGAAAGCAATGCTCAAAATGTTTTTGGGTCCTGTTTTTTCATTGAGCCGTGCCAATATCA
dot-bracket secondary structure
((((((((..(((((((((.((((((((..(((((((.....)))))))..)))))))).)))))))))..)))))))).
SIMILARITIES| miRBase gma-MIR171a: 4e-40 PMRD gma-miR171a: 4e-40 microPC miR171: 4e-40 | UniProt no hits RFAM MIR171_1: 8e-20 |
Identical with: gma-MIR171a from miRBase (MNEST040454) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
