ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR528
source: microPC, original name: miR528
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGGGGCATGCAGAGGAG miRNA* CCTGTGCCTGCCTCTTCCA mismatches: 3 bulges: 0 |
pre-miRNA
TGGAAGGGGCATGCAGAGGAGCACGAGGGTTGGCTGGAAGCCGACCTACGCCTCGCTGGCTCTCCTGTGCCTGCCTCTTCCA
dot-bracket secondary structure
.((((((((((.(((.(((((.....((((((((.....))))))))..(((.....))).))))).))).)))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGGAAGGGGCATGCAGAGGAGCACGAGGGTTGGCTGGAAGCCGACCTACGCCTCGCTGGCTCTCCTGTGCCTGCCTCTTCCA
dot-bracket secondary structure
.((((((((((.(((.(((((.....((((((((.....))))))))..(((.....))).))))).))).)))))))))).
SIMILARITIES| miRBase sbi-MIR528: 6e-39 PMRD osa-miR528: 0.000004 microPC miR528: 3e-34 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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