ABOUT THIS RECORDspecies: Triticum aestivum
source: microPC, original name: miR1436
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTATGGGACGGAGGGAGT miRNA* TTCCTTCGTCCCATAATAT mismatches: 0 bulges: 0 |
pre-miRNA
GCTTCCTTCGTCCCATAATATATGAGTGTTTTTTTTTTACAAAAGTAAAAAACGCTCTTATATTATGGGACGGAGGGAGT
dot-bracket secondary structure
((((((((((((((((((((((.(((((((((((.(((....))).))))))))))).))))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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GCTTCCTTCGTCCCATAATATATGAGTGTTTTTTTTTTACAAAAGTAAAAAACGCTCTTATATTATGGGACGGAGGGAGT
dot-bracket secondary structure
((((((((((((((((((((((.(((((((((((.(((....))).))))))))))).))))))))))))))))))))))
SIMILARITIES| miRBase tae-MIR1120: 0.0000002 PMRD tae-miR1120: 0.0000002 microPC miR1436: 3e-22 | UniProt no hits RFAM MIR1122: 0.00000000007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
