ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR398
source: microPC, original name: miR398
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCT miRNA* GAGTGGATCTGAGAACACAAG mismatches: 1 bulges: 1 |
pre-miRNA
AGGAGTGGATCTGAGAACACAAGGCTGGTTTGCACTGCTATATTATGATCGATTGGTATAAGGTGAATTTACTTTGTGTTCTCAGGTCACCCCT
dot-bracket secondary structure
(((.(((.((((((((((((((((..((((..(.((..(((((((........))))))))))..))))..))))))))))))))))))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGAGTGGATCTGAGAACACAAGGCTGGTTTGCACTGCTATATTATGATCGATTGGTATAAGGTGAATTTACTTTGTGTTCTCAGGTCACCCCT
dot-bracket secondary structure
(((.(((.((((((((((((((((..((((..(.((..(((((((........))))))))))..))))..))))))))))))))))))).)))
SIMILARITIES| miRBase gma-MIR398b: 2e-48 PMRD gma-miR398b: 2e-48 microPC miR398: 2e-48 | UniProt no hits RFAM MIR398: 0.00002 |
Identical with: gma-MIR398b from miRBase (MNEST040479) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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