ABOUT THIS RECORDspecies: Brassica oleracea var. alboglabra
source: microPC, original name: miR171
Taxonomy by NCBI:
Brassica oleracea var. alboglabra Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATAT miRNA* ATTGGTACGGTTGAATCGAA mismatches: 1 bulges: 0 |
pre-miRNA
ATATTGGTACGGTTGAATCGAATCAAATCACTCTATCTTTCTCTTGGGTCAGTTGATTTGATTGAGCCGTGCCAATAT
dot-bracket secondary structure
((((((((((((((.(((((((((((...((((............))))...))))))))))).))))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATATTGGTACGGTTGAATCGAATCAAATCACTCTATCTTTCTCTTGGGTCAGTTGATTTGATTGAGCCGTGCCAATAT
dot-bracket secondary structure
((((((((((((((.(((((((((((...((((............))))...))))))))))).))))))))))))))
SIMILARITIES| miRBase ptc-MIR171i: 0.00000006 PMRD ptc-miR171i: 0.00000006 microPC miR171: 5e-39 | UniProt no hits RFAM MIR171_1: 0.000001 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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