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ABOUT THIS RECORD
ID:
MNEST044977
species:
Vitis vinifera
source:
microPC, original name:
miR159
Taxonomy by NCBI:
Vitis vinifera
Vitis
Vitaceae
Vitales
rosids incertae sedis
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTCTA
miRNA*
GAGCTCCTTGAAGTCCAATA
mismatches:
2
bulges:
0
View larger
pre-miRNA
TG
GAGCTCCTTGAAGTCCAATA
GAGGGTCTTACTGGGTAGATTGAGCTGCTGACTTATGGATCCCACAGCCCTATCCCGTCAATGGGGGGCATTGGATAG
GCTTGTGGCTTGCATATCTCAAGAGCTGCATTATCCAAGTTTAGATCCTTGT
TTGGATTGAAGGGAGCTCTA
dot-bracket secondary structure
((
(((((((((..(((((((..
((((((((.(((((((((..((((((..(((..((((.(..((((((.(((((((.(((.......)))...))))))
).))))))..).))))..)))..)))).)))))))).)))..))))))))..
)))))))..)))))))))))
SIMILARITIES
miRBase
vvi-MIR159c
:
3e-92
PMRD
vvi-miR159c
:
3e-92
microPC
miR159
:
1e-94
UniProt
no hits
RFAM
MIR159: 5e-91
Identical with:
miR319
from microPC (
MNEST046237
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
degradome data
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