ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR162
source: microPC, original name: miR162
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGATGCAGCGGTTCATCGATC mismatches: 2 bulges: 0 |
pre-miRNA
CTGGATGCAGCGGTTCATCGATCTCTTCCTGAAATTGTTGTGAAAAAAGCAGATCAAGAATCGGTCGATAAACCTCTGCATCCAG
dot-bracket secondary structure
((((((((((.((((.(((((((..(((.(((..(((((........))))).))).)))..))))))).)))).))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence
CTGGATGCAGCGGTTCATCGATCTCTTCCTGAAATTGTTGTGAAAAAAGCAGATCAAGAATCGGTCGATAAACCTCTGCATCCAG
dot-bracket secondary structure
((((((((((.((((.(((((((..(((.(((..(((((........))))).))).)))..))))))).)))).))))))))))
SIMILARITIES| miRBase vvi-MIR162: 4e-43 PMRD vvi-miR162: 4e-43 microPC miR162: 6e-42 | UniProt no hits RFAM MIR162_2: 7e-42 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence
