ABOUT THIS RECORDspecies: Cichorium endivia
source: microPC, original name: miR156
Taxonomy by NCBI:
Cichorium endivia Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACAGAAGAGAGGGAGCA miRNA* CTCTCTTTCTATCTGTC mismatches: 0 bulges: 1 |
pre-miRNA
GACAGAAGAGAGGGAGCATTCATAGTTCTTGCATGAAAGAAATCATGCTTGAATTTATGTATGCTCTCTTTCTATCTGTC
dot-bracket secondary structure
(((((((((((((((((((.((((((((..((((((......))))))..))).))))).))))))))))))).))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GACAGAAGAGAGGGAGCATTCATAGTTCTTGCATGAAAGAAATCATGCTTGAATTTATGTATGCTCTCTTTCTATCTGTC
dot-bracket secondary structure
(((((((((((((((((((.((((((((..((((((......))))))..))).))))).))))))))))))).))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC miR156: 4e-40 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
