ABOUT THIS RECORDspecies: Vigna unguiculata
source: microPC, original name: miR159
Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGACTGAAGGGAGCTC miRNA* GCTTTCTTCAGTCCACTCA mismatches: 4 bulges: 0 |
pre-miRNA
GAGCTTTCTTCAGTCCACTCATAGGTGGCAGTAAGATTCAATTAGCTGCCGACTCATTCATCCAAATGCTGAGTAGTGATACTCTTAAAGATACTCATCA
AATGAGTGAATGATGCGGGAGACAAATTGATTCTTAAGTTTCCTGTACTTGGACTGAAGGGAGCTC
dot-bracket secondary structure
(((((..((((((((((...(((((..((..(((((.((((((.(((.(((..(((((((..((..((.((((((.(((.....)))....)))))).))
..))..)))))))..))).)).).)))))).))))).))..)))))...))))))))))..)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGCTTTCTTCAGTCCACTCATAGGTGGCAGTAAGATTCAATTAGCTGCCGACTCATTCATCCAAATGCTGAGTAGTGATACTCTTAAAGATACTCATCA
AATGAGTGAATGATGCGGGAGACAAATTGATTCTTAAGTTTCCTGTACTTGGACTGAAGGGAGCTC
dot-bracket secondary structure
(((((..((((((((((...(((((..((..(((((.((((((.(((.(((..(((((((..((..((.((((((.(((.....)))....)))))).))
..))..)))))))..))).)).).)))))).))))).))..)))))...))))))))))..)))))
SIMILARITIES| miRBase gma-MIR319a: 6e-53 PMRD gma-miR319a: 6e-53 microPC miR319: 4e-91 | UniProt no hits RFAM MIR159: 1e-38 |
Identical with: miR319 from microPC (MNEST046740) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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